Package: HybridMicrobiomes 0.1.1

HybridMicrobiomes: Analysis of Host-Associated Microbiomes from Hybrid Organisms

A set of tools to analyze and visualize the relationships between host-associated microbiomes of hybrid organisms and those of their progenitor species. Though not necessary, installing the microViz package is recommended as a check for phyloseq objects. To install microViz from R Universe use the following command: install.packages("microViz", repos = c(davidbarnett = "https://david-barnett.r-universe.dev", getOption("repos"))). To install microViz from GitHub use the following commands: install.packages("devtools") followed by devtools::install_github("david-barnett/microViz").

Authors:Benjamin Camper [aut], Zachary Lauglin [ctb], Daniel Malagon [ctb], Robert Denton [ctb], Sharon Bewick [aut, cre], National Science Foundation Division of Integrative Organismal Systems [fnd], Clemson University Support for Early Exploration and Development Grant [fnd]

HybridMicrobiomes_0.1.1.tar.gz
HybridMicrobiomes_0.1.1.zip(r-4.7)HybridMicrobiomes_0.1.1.zip(r-4.6)HybridMicrobiomes_0.1.1.zip(r-4.5)
HybridMicrobiomes_0.1.1.tgz(r-4.6-any)HybridMicrobiomes_0.1.1.tgz(r-4.5-any)
HybridMicrobiomes_0.1.1.tar.gz(r-4.7-any)HybridMicrobiomes_0.1.1.tar.gz(r-4.6-any)
HybridMicrobiomes_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
HybridMicrobiomes/json (API)

# Install 'HybridMicrobiomes' in R:
install.packages('HybridMicrobiomes', repos = c('https://bewicklab.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarephyloseq

1.00 score 129 downloads 10 exports 114 dependencies

Last updated from:c1218ba8cc. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK283
source / vignettesOK224
linux-release-x86_64OK300
macos-release-arm64OK284
macos-oldrel-arm64OK218
windows-develOK228
windows-releaseOK213
windows-oldrelOK213
wasm-releaseOK182

Exports:FourHbootstrapFourHbootstrapAFourHcentroidFourHcompareFourHnullFourHnullplaneFourHnullplaneDFourHpreanalysisFourHquaternaryFourHquaternaryC

Dependencies:abindade4apebase64encbayesmbezierBiobaseBiocGenericsbiomformatBiostringsbslibcachemcliclustercodetoolscommonmarkcompositionscpp11crayondata.tabledeldirDEoptimRdigestevaluatefarverfastmapFNNfontawesomeforeachfsgenericsgeometryggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvigraphIRangesisobanditeratorsjpegjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelifecyclelinproglpSolvemagicmagrittrMASSMatrixmclustmemoisemgcvmimemulticoolmulttestmvtnormnlmeotelPERMANOVApermutephyloseqpixmappkgconfigplyrpngpracmapromisesR6rappdirsRColorBrewerRcppRcppArmadilloRcppProgressreshape2rglrjsonrlangrmarkdownrobustbaseS4VectorsS7sassscalesSeqinfoshinysourcetoolsspStereoMorphstringistringrsurvivalsvgViewRtensorAtifftinytexvctrsveganviridisLitewithrxfunxtableXVectoryaml