Package: HybridMicrobiomes 0.1.1
HybridMicrobiomes: Analysis of Host-Associated Microbiomes from Hybrid Organisms
A set of tools to analyze and visualize the relationships between host-associated microbiomes of hybrid organisms and those of their progenitor species. Though not necessary, installing the microViz package is recommended as a check for phyloseq objects. To install microViz from R Universe use the following command: install.packages("microViz", repos = c(davidbarnett = "https://david-barnett.r-universe.dev", getOption("repos"))). To install microViz from GitHub use the following commands: install.packages("devtools") followed by devtools::install_github("david-barnett/microViz").
Authors:
HybridMicrobiomes_0.1.1.tar.gz
HybridMicrobiomes_0.1.1.zip(r-4.7)HybridMicrobiomes_0.1.1.zip(r-4.6)HybridMicrobiomes_0.1.1.zip(r-4.5)
HybridMicrobiomes_0.1.1.tgz(r-4.6-any)HybridMicrobiomes_0.1.1.tgz(r-4.5-any)
HybridMicrobiomes_0.1.1.tar.gz(r-4.7-any)HybridMicrobiomes_0.1.1.tar.gz(r-4.6-any)
HybridMicrobiomes_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
HybridMicrobiomes/json (API)
| # Install 'HybridMicrobiomes' in R: |
| install.packages('HybridMicrobiomes', repos = c('https://bewicklab.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c1218ba8cc. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 283 | ||
| source / vignettes | OK | 224 | ||
| linux-release-x86_64 | OK | 300 | ||
| macos-release-arm64 | OK | 284 | ||
| macos-oldrel-arm64 | OK | 218 | ||
| windows-devel | OK | 228 | ||
| windows-release | OK | 213 | ||
| windows-oldrel | OK | 213 | ||
| wasm-release | OK | 182 |
Exports:FourHbootstrapFourHbootstrapAFourHcentroidFourHcompareFourHnullFourHnullplaneFourHnullplaneDFourHpreanalysisFourHquaternaryFourHquaternaryC
Dependencies:abindade4apebase64encbayesmbezierBiobaseBiocGenericsbiomformatBiostringsbslibcachemcliclustercodetoolscommonmarkcompositionscpp11crayondata.tabledeldirDEoptimRdigestevaluatefarverfastmapFNNfontawesomeforeachfsgenericsgeometryggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvigraphIRangesisobanditeratorsjpegjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelifecyclelinproglpSolvemagicmagrittrMASSMatrixmclustmemoisemgcvmimemulticoolmulttestmvtnormnlmeotelPERMANOVApermutephyloseqpixmappkgconfigplyrpngpracmapromisesR6rappdirsRColorBrewerRcppRcppArmadilloRcppProgressreshape2rglrjsonrlangrmarkdownrobustbaseS4VectorsS7sassscalesSeqinfoshinysourcetoolsspStereoMorphstringistringrsurvivalsvgViewRtensorAtifftinytexvctrsveganviridisLitewithrxfunxtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bootstraps of the incidence-based 4H Index | FourHbootstrap |
| Bootstraps of the abundance-based 4H Index | FourHbootstrapA |
| Centroid of bootstrapped 4H-indices | FourHcentroid |
| Tests whether multiple systems have significantly different 4H-indices | FourHcompare |
| Bootstrapped null models of the 4H-index | FourHnull |
| Null Plane | FourHnullplane |
| Bootstrap Distribution Around the Null Plane | FourHnullplaneD |
| Bootstraps of the percentage of gamma diversity that is core | FourHpreanalysis |
| Plot bootstrapped 4H-indices | FourHquaternary |
| Plot centroid of bootstrapped 4H-indices | FourHquaternaryC |
