Package: HybridMicrobiomes 0.1.1

HybridMicrobiomes: Analysis of Host-Associated Microbiomes from Hybrid Organisms

A set of tools to analyze and visualize the relationships between host-associated microbiomes of hybrid organisms and those of their progenitor species. Though not necessary, installing the microViz package is recommended as a check for phyloseq objects. To install microViz from R Universe use the following command: install.packages("microViz", repos = c(davidbarnett = "https://david-barnett.r-universe.dev", getOption("repos"))). To install microViz from GitHub use the following commands: install.packages("devtools") followed by devtools::install_github("david-barnett/microViz").

Authors:Benjamin Camper [aut], Zachary Lauglin [ctb], Daniel Malagon [ctb], Robert Denton [ctb], Sharon Bewick [aut, cre], National Science Foundation Division of Integrative Organismal Systems [fnd], Clemson University Support for Early Exploration and Development Grant [fnd]

HybridMicrobiomes_0.1.1.tar.gz
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HybridMicrobiomes_0.1.1.tgz(r-4.4-any)HybridMicrobiomes_0.1.1.tgz(r-4.3-any)
HybridMicrobiomes_0.1.1.tar.gz(r-4.5-noble)HybridMicrobiomes_0.1.1.tar.gz(r-4.4-noble)
HybridMicrobiomes_0.1.1.tgz(r-4.4-emscripten)HybridMicrobiomes_0.1.1.tgz(r-4.3-emscripten)
HybridMicrobiomes.pdf |HybridMicrobiomes.html
HybridMicrobiomes/json (API)

# Install 'HybridMicrobiomes' in R:
install.packages('HybridMicrobiomes', repos = c('https://bewicklab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarephyloseq

1.00 score 152 downloads 10 exports 129 dependencies

Last updated 12 months agofrom:c1218ba8cc. Checks:OK: 2 WARNING: 1 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winNOTEOct 31 2024
R-4.3-macNOTEOct 31 2024

Exports:FourHbootstrapFourHbootstrapAFourHcentroidFourHcompareFourHnullFourHnullplaneFourHnullplaneDFourHpreanalysisFourHquaternaryFourHquaternaryC

Dependencies:abindade4apeaskpassbase64encbayesmbezierBiobaseBiocGenericsbiomformatBiostringsbslibcachemcliclustercodetoolscolorspacecommonmarkcompositionscpp11crayoncurldata.tabledeldirDEoptimRdigestevaluatefansifarverfastmapFNNfontawesomeforeachfsgenericsGenomeInfoDbGenomeInfoDbDatageometryggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobanditeratorsjpegjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelifecyclelinproglpSolvemagicmagrittrMASSMatrixmclustmemoisemgcvmimemulticoolmulttestmunsellmvtnormnlmeopensslPERMANOVApermutephyloseqpillarpixmappkgconfigplyrpngpracmapromisesR6rappdirsRColorBrewerRcppRcppArmadilloRcppProgressreshape2rglrhdf5rhdf5filtersRhdf5librjsonrlangrmarkdownrobustbaseS4VectorssassscalesshinysourcetoolsspStereoMorphstringistringrsurvivalsvgViewRsystensorAtibbletifftinytexUCSC.utilsutf8vctrsveganviridisLitewithrxfunxtableXVectoryamlzlibbioc