{ "_id": "6a1fd902b401979e73436f5b", "Package": "HybridMicrobiomes", "Type": "Package", "Title": "Analysis of Host-Associated Microbiomes from Hybrid Organisms", "Version": "0.1.1", "Authors@R": "c(person(given = \"Benjamin\",\nfamily = \"Camper\",\nrole = \"aut\"),\nperson(given = \"Zachary\",\nfamily = \"Lauglin\",\nrole = \"ctb\"),\nperson(given = \"Daniel\",\nfamily = \"Malagon\",\nrole = \"ctb\"),\nperson(given = \"Robert\",\nfamily = \"Denton\",\nrole = \"ctb\"),\nperson(given = \"Sharon\",\nfamily = \"Bewick\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sbewick@clemson.edu\",\n),\nperson(given=\"National Science Foundation Division of Integrative Organismal Systems (award #2104605)\",\nrole=\"fnd\"),\nperson(given=\"Clemson University Support for Early Exploration and Development (CU SEED) Grant\",\nrole=\"fnd\"))", "Description": "A set of tools to analyze and visualize the relationships\nbetween host-associated microbiomes of hybrid organisms and\nthose of their progenitor species. Though not necessary,\ninstalling the microViz package is recommended as a check for\nphyloseq objects. To install microViz from R Universe use the\nfollowing command: install.packages(\"microViz\", repos =\nc(davidbarnett = \"https://david-barnett.r-universe.dev\",\ngetOption(\"repos\"))). To install microViz from GitHub use the\nfollowing commands: install.packages(\"devtools\") followed by\ndevtools::install_github(\"david-barnett/microViz\").", "License": "GPL-2", "Encoding": "UTF-8", "biocViews": "Software, phyloseq", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 07:28:22 UTC", "User": "root" }, "Author": "Benjamin Camper [aut], Zachary Lauglin [ctb], Daniel Malagon\n[ctb], Robert Denton [ctb], Sharon Bewick [aut, cre], National\nScience Foundation Division of Integrative Organismal Systems\n(award #2104605) [fnd], Clemson University Support for Early\nExploration and Development (CU SEED) Grant [fnd]", "Maintainer": "Sharon Bewick ", "Config/pak/sysreqs": "cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev\nmake texlive libicu-dev libjpeg-dev libpng-dev libtiff-dev\nlibuv1-dev libxml2-dev libgl1-mesa-dev zlib1g-dev", "Repository": "https://bewicklab.r-universe.dev", "Date/Publication": "2023-12-06 02:38:12 UTC", "RemoteUrl": "https://github.com/cran/HybridMicrobiomes", "RemoteRef": "HEAD", "RemoteSha": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "MD5sum": "a756ea39a0fccc510eb08afa41fc43f0", "_user": "bewicklab", "_type": "src", "_file": "HybridMicrobiomes_0.1.1.tar.gz", "_fileid": "7b6ff639a33f5a8695d81846cbac4e1582d869a1c7d1ff20499102e379efd578", "_filesize": 249657, "_sha256": "7b6ff639a33f5a8695d81846cbac4e1582d869a1c7d1ff20499102e379efd578", "_created": "2026-06-03T07:28:22.000Z", "_published": "2026-06-03T07:34:26.376Z", "_distro": "noble", "_jobs": [ { "job": 79243467597, "time": 283, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7378355411" }, { "job": 79243467587, "time": 300, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7378360284" }, { "job": 79243467554, "time": 218, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7378334690" }, { "job": 79243467513, "time": 284, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7378354886" }, { "job": 79242921351, "time": 224, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7378267682" }, { "job": 79243467574, "time": 182, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7378324224" }, { "job": 79243467591, "time": 228, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7378338283" }, { "job": 79243467752, "time": 213, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7378333931" }, { "job": 79243467622, "time": 213, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7378333894" } ], "_buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/HybridMicrobiomes", "_commit": { "id": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "author": "Sharon Bewick ", "committer": "cran-robot ", "message": "version 0.1.1\n", "time": 1701830292 }, "_maintainer": { "name": "Sharon Bewick", "email": "sbewick@clemson.edu", "login": "bewicklab", "description": "", "uuid": 68816453 }, "_registered": true, "_dependencies": [ { "package": "rgl", "role": "Imports" }, { "package": "compositions", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "PERMANOVA", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "vegan", "role": "Imports" }, { "package": "ks", "role": "Imports" }, { "package": "ape", "role": "Imports" }, { "package": "geometry", "role": "Imports" }, { "package": "StereoMorph", "role": "Imports" }, { "package": "phyloseq", "role": "Imports" }, { "package": "microViz", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "software", "phyloseq" ], "_stars": 0, "_contributors": [ { "user": "bewicklab", "count": 2, "uuid": 68816453 } ], "_userbio": { "uuid": 68816453, "type": "user", "name": "bewicklab" }, "_downloads": { "count": 129, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HybridMicrobiomes" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/HybridMicrobiomes.html", "manual.pdf" ], "_realowner": "bewicklab", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2023-05-04" }, { "version": "0.1.1", "date": "2023-12-06" } ], "_exports": [ "FourHbootstrap", "FourHbootstrapA", "FourHcentroid", "FourHcompare", "FourHnull", "FourHnullplane", "FourHnullplaneD", "FourHpreanalysis", "FourHquaternary", "FourHquaternaryC" ], "_help": [ { "page": "FourHbootstrap", "title": "Bootstraps of the incidence-based 4H Index", "topics": [ "FourHbootstrap" ] }, { "page": "FourHbootstrapA", "title": "Bootstraps of the abundance-based 4H Index", "topics": [ "FourHbootstrapA" ] }, { "page": "FourHcentroid", "title": "Centroid of bootstrapped 4H-indices", "topics": [ "FourHcentroid" ] }, { "page": "FourHcompare", "title": "Tests whether multiple systems have significantly different 4H-indices", "topics": [ "FourHcompare" ] }, { "page": "FourHnull", "title": "Bootstrapped null models of the 4H-index", "topics": [ "FourHnull" ] }, { "page": "FourHnullplane", "title": "Null Plane", "topics": [ "FourHnullplane" ] }, { "page": "FourHnullplaneD", "title": "Bootstrap Distribution Around the Null Plane", "topics": [ "FourHnullplaneD" ] }, { "page": "FourHpreanalysis", "title": "Bootstraps of the percentage of gamma diversity that is core", "topics": [ "FourHpreanalysis" ] }, { "page": "FourHquaternary", "title": "Plot bootstrapped 4H-indices", "topics": [ "FourHquaternary" ] }, { "page": "FourHquaternaryC", "title": "Plot centroid of bootstrapped 4H-indices", "topics": [ "FourHquaternaryC" ] } ], "_rundeps": [ "abind", "ade4", "ape", "base64enc", "bayesm", "bezier", "Biobase", "BiocGenerics", "biomformat", "Biostrings", "bslib", "cachem", "cli", "cluster", "codetools", "commonmark", "compositions", "cpp11", "crayon", "data.table", "deldir", "DEoptimR", "digest", "evaluate", "farver", "fastmap", "FNN", "fontawesome", "foreach", "fs", "generics", "geometry", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "igraph", "IRanges", "isoband", "iterators", "jpeg", "jquerylib", "jsonlite", "kernlab", "KernSmooth", "knitr", "ks", "labeling", "later", "lattice", "lifecycle", "linprog", "lpSolve", "magic", "magrittr", "MASS", "Matrix", "mclust", "memoise", "mgcv", "mime", "multicool", "multtest", "mvtnorm", "nlme", "otel", "PERMANOVA", "permute", "phyloseq", "pixmap", "pkgconfig", "plyr", "png", "pracma", "promises", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppProgress", "reshape2", "rgl", "rjson", "rlang", "rmarkdown", "robustbase", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "shiny", "sourcetools", "sp", "StereoMorph", "stringi", "stringr", "survival", "svgViewR", "tensorA", "tiff", "tinytex", "vctrs", "vegan", "viridisLite", "withr", "xfun", "xtable", "XVector", "yaml" ], "_score": 1, "_indexed": true, "_nocasepkg": "hybridmicrobiomes", "_universes": [ "bewicklab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-06-03T07:31:38.000Z", "distro": "noble", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "5fa8b7cfac0712054704887640d50d75428e75d2d6468c6440d87cb3abac11a6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-06-03T07:31:51.000Z", "distro": "noble", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "d9fff733ab09ddc667996bb84d4843b1010aab3ea2daab875b9268b65d9620dc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-06-03T07:31:09.000Z", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "c7f268da0afa51d5601b7cb1a8e1be4c15c359bd079477e9ab81f350c92fa85d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-06-03T07:31:34.000Z", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "168a469b8e5ad9c279225742837ba791d01efd13b67c3c51dfffcee4d3ccd46f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-06-03T07:31:51.000Z", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "95411e2634dc9f1e9c0af10cce1ec02240f8faffa266af21d524bf34b7fe34c4", "status": "success", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-06-03T07:30:24.000Z", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "4f5e277ab950cd56e3e0f7db9a319b5396d94cb29c89f6f2263a472e7fd20841", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-06-03T07:30:08.000Z", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "7640eab49e33b8b101385b8891bdeed04410d58ba6f46fc6e8bc4e4204391f90", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-06-03T07:30:01.000Z", "commit": "c1218ba8cce90dccc4e4eccb43202cf87ea116d0", "fileid": "afb978ff7a11fc528cd564379ecda8b97665a72fd83ab9a9d582512e8d850dbb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bewicklab/actions/runs/26870050882" } ] }