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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "holobiont" in publications use:'
type: software
license: GPL-2.0-only
title: 'holobiont: Microbiome Analysis Tools'
version: 0.1.2
doi: 10.32614/CRAN.package.holobiont
abstract: We provide functions for identifying the core community phylogeny in any
  microbiome, drawing phylogenetic Venn diagrams, calculating the core Faith’s PD
  for a set of communities, and calculating the core UniFrac distance between two
  sets of communities. All functions rely on construction of a core community phylogeny,
  which is a phylogeny where branches are defined based on their presence in multiple
  samples from a single type of habitat. Our package provides two options for constructing
  the core community phylogeny, a tip-based approach, where the core community phylogeny
  is identified based on incidence of leaf nodes and a branch-based approach, where
  the core community phylogeny is identified based on incidence of individual branches.
  We suggest use of the microViz package, which can be downloaded from the website
  provided under Additional repositories.
authors:
- family-names: Bewick
  given-names: Sharon
  email: sbewick@clemson.edu
- family-names: Camper
  given-names: Benjamin
repository: https://bewicklab.r-universe.dev
commit: 142eecde0322e316ac31efdb66e6f64694da78fb
date-released: '2024-10-16'
contact:
- family-names: Bewick
  given-names: Sharon
  email: sbewick@clemson.edu